Re-run this search with the SEG filter switched off
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= PGUG_05105
(137 letters)
Database: Seq/AA.fsa
85,676 sequences; 40,655,052 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
PGUG_05105 c6 complement(900610..901023) [414 bp, 137 aa] 277 2e-97 clus_CGOB_00022 c4 complement(1146644..1147015,1147227..1147268)... 268 4e-94 DEHA2C04884g Chr3 (444246..444287,444544..444915) [414 bp, 137 a... 268 6e-94 PICST_89371 Chr4 complement(455461..455832,456303..456344) [414 ... 268 1e-93 SPAPADRAFT_63277 c7 complement(438168..438539,438910..438951) [4... 266 3e-93 CORT0F02820 c6 complement(578218..578589,578964..579005) [414 bp... 266 3e-93 CPAR2_601830 Chr6 complement(433820..434191,434538..434579) [414... 266 3e-93 LELG_04811 c7 (539587..539628,540229..540600) [414 bp, 137 aa] 265 1e-92 CTRG_02906 c3 complement(1942953..1943324,1943760..1943801) [414... 264 2e-92 orf19.3504 Chr6 complement(425041..425412,425928..425969) [414 b... 264 3e-92 CAWG_05159 c7 (617572..617617,618133..618500) [414 bp, 137 aa] 261 2e-91 CANTEDRAFT_121943 c15 (598717..598746,599043..599414) [402 bp, 1... 259 2e-90 YER117W Chr5 (396765..396806,397278..397649) [414 bp, 137 aa] Pr... 245 7e-85 YBL087C Chr2 complement(59818..60189,60694..60735) [414 bp, 137 ... 245 7e-85 CD36_62220 Chr6 complement(438921..439292,439791..439796) [378 b... 240 3e-83 PICST_89472 Chr5 complement(1698773..1699171) [399 bp, 132 aa] p... 67 1e-14 CTRG_05235 c8 complement(11738..12136) [399 bp, 132 aa] 66 3e-14 CORT0E04890 c5 (1100060..1100470) [411 bp, 136 aa] S. cerevisiae... 65 7e-14 SPAPADRAFT_60997 c4 (16426..16815) [390 bp, 129 aa] 65 8e-14 CPAR2_302710 Chr3 (660989..661402) [414 bp, 137 aa] S. cerevisia... 65 1e-13 LELG_03861 c5 (513468..513875) [408 bp, 135 aa] 64 2e-13 CAWG_04408 c6 complement(6665..7063) [399 bp, 132 aa] 64 2e-13 orf19.5684 Chr5 complement(15077..15475) [399 bp, 132 aa] Predic... 64 2e-13 CD36_50160 Chr5 complement(30040..30438) [399 bp, 132 aa] Simil... 64 2e-13 CANTEDRAFT_103580 c9 complement(295023..295421) [399 bp, 132 aa] 59 2e-11 CLUG_05805 c8 complement(463602..464000) [399 bp, 132 aa] 58 4e-11 DEHA2B10296g Chr2 complement(812131..812529) [399 bp, 132 aa] hi... 54 1e-09 PGUG_01682 c2 (884488..884886) [399 bp, 132 aa] 52 5e-09 YKL170W Chr11 (130639..131055) [417 bp, 138 aa] Mitochondrial ri... 32 0.12 DEHA2D02926g Chr4 complement(249655..250923) [1269 bp, 422 aa] s... 28 7.5
>PGUG_05105 c6 complement(900610..901023) [414 bp, 137 aa]
Length = 137
Score = 277 bits (708), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MSGSGASGNKFRMSLALPTGAVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSLALPTGAVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPTGAVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>clus_CGOB_00022 c4 complement(1146644..1147015,1147227..1147268) [414 bp, 137 aa]
annotated by CGOB
Length = 137
Score = 268 bits (686), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 131/137 (95%), Positives = 134/137 (97%)
Query: 1 MSGSGASGNKFRMSLALPTGAVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSL LP GAV+NCCDNSGARNLY+LAVKGFGARLNRLPAASAGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLGLPVGAVVNCCDNSGARNLYILAVKGFGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIVVRQ+RPWRRKDG YLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVVRQSRPWRRKDGTYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>DEHA2C04884g Chr3 (444246..444287,444544..444915) [414 bp, 137 aa] similar to
uniprot|P04451 Saccharomyces cerevisiae YER117W RPL23B
Protein component of the large (60S) ribosomal
subunit,identical to Rpl23Ap and has similarity to E.
coli L14 and rat L23 ribosomal proteins
Length = 137
Score = 268 bits (685), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 130/137 (94%), Positives = 135/137 (98%)
Query: 1 MSGSGASGNKFRMSLALPTGAVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSL LP GAV+NCCDNSGARNLY+++VKGFGARLNRLPAASAGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLGLPVGAVVNCCDNSGARNLYIVSVKGFGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKK+MPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKIMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>PICST_89371 Chr4 complement(455461..455832,456303..456344) [414 bp, 137 aa]
predicted protein
Length = 137
Score = 268 bits (684), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 132/137 (96%), Positives = 134/137 (97%)
Query: 1 MSGSGASGNKFRMSLALPTGAVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSLALP GAVMNC DNSGARNLYVLAVKG GARLNRLPAASAGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGVGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIV+RQ+RPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVIRQSRPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>SPAPADRAFT_63277 c7 complement(438168..438539,438910..438951) [414 bp, 137 aa]
Length = 137
Score = 266 bits (680), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 130/137 (94%), Positives = 134/137 (97%)
Query: 1 MSGSGASGNKFRMSLALPTGAVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSLALP GA+MNC DNSGARNLYVLAVKG GARLNRLPAASAGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAIMNCADNSGARNLYVLAVKGIGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIV+RQ++PWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVIRQSKPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>CORT0F02820 c6 complement(578218..578589,578964..579005) [414 bp, 137 aa]
putative ribosomal protein
Length = 137
Score = 266 bits (680), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 132/137 (96%), Positives = 134/137 (97%)
Query: 1 MSGSGASGNKFRMSLALPTGAVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSLALP GAVMNC DNSGARNLYVLAVKG GARLNRLPAASAGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIVVRQA+PWRR+DGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>CPAR2_601830 Chr6 complement(433820..434191,434538..434579) [414 bp, 137 aa]
Putaive ribosomal protein
Length = 137
Score = 266 bits (680), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 132/137 (96%), Positives = 134/137 (97%)
Query: 1 MSGSGASGNKFRMSLALPTGAVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSLALP GAVMNC DNSGARNLYVLAVKG GARLNRLPAASAGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIVVRQA+PWRR+DGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>LELG_04811 c7 (539587..539628,540229..540600) [414 bp, 137 aa]
Length = 137
Score = 265 bits (676), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 129/137 (94%), Positives = 134/137 (97%)
Query: 1 MSGSGASGNKFRMSLALPTGAVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSLALP GA+MNC DNSGARNLYVLAVKG GARLNRLPAASAGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAIMNCADNSGARNLYVLAVKGVGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIV+RQ++PWRR+DGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVIRQSKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>CTRG_02906 c3 complement(1942953..1943324,1943760..1943801) [414 bp, 137 aa]
Length = 137
Score = 264 bits (675), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 129/137 (94%), Positives = 134/137 (97%)
Query: 1 MSGSGASGNKFRMSLALPTGAVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSLALP GAVMNC DNSGARNLYVLAVKG GARLNRLPAA+AGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGVGARLNRLPAAAAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIV+RQ++PWRR+DGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVIRQSKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>orf19.3504 Chr6 complement(425041..425412,425928..425969) [414 bp, 137 aa]
Putative ribosomal protein; genes encoding cytoplasmic
ribosomal subunits, translation factors, and tRNA
synthetases are downregulated upon phagocytosis by
murine macrophage
Length = 137
Score = 264 bits (674), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 129/137 (94%), Positives = 134/137 (97%)
Query: 1 MSGSGASGNKFRMSLALPTGAVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMSLALP GAVMNC DNSGARNLYVLAVKG GARLNRLPAA+AGDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAAAAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIV+RQ++PWRR+DGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVIRQSKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>CAWG_05159 c7 (617572..617617,618133..618500) [414 bp, 137 aa]
Length = 137
Score = 261 bits (668), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 127/137 (92%), Positives = 134/137 (97%)
Query: 1 MSGSGASGNKFRMSLALPTGAVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMA 60
MSGSGASGNKFRMS++LP GAVMNC DNSGARNLYVLAVKG GARLNRLPAA+AGDMVMA
Sbjct: 1 MSGSGASGNKFRMSVSLPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAAAAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIV+RQ++PWRR+DGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK
Sbjct: 61 TVKKGKPELRKKVMPAIVIRQSKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPRIASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>CANTEDRAFT_121943 c15 (598717..598746,599043..599414) [402 bp, 133 aa]
Length = 133
Score = 259 bits (662), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 125/132 (94%), Positives = 130/132 (98%)
Query: 6 ASGNKFRMSLALPTGAVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMATVKKG 65
+SGNKFRMSL LP GAV+NCCDNSGARNLY+LAVKGFGA+LNRLPAASAGDMVMATVKKG
Sbjct: 2 SSGNKFRMSLGLPVGAVLNCCDNSGARNLYILAVKGFGAKLNRLPAASAGDMVMATVKKG 61
Query: 66 KPELRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL 125
KPELRKKVMPAIVVRQ+RPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL
Sbjct: 62 KPELRKKVMPAIVVRQSRPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL 121
Query: 126 WPRIASNSGVVV 137
WPRIASNSGVVV
Sbjct: 122 WPRIASNSGVVV 133
>YER117W Chr5 (396765..396806,397278..397649) [414 bp, 137 aa] Protein
component of the large (60S) ribosomal subunit,
identical to Rpl23Ap and has similarity to E. coli L14
and rat L23 ribosomal proteins
Length = 137
Score = 245 bits (625), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 117/137 (85%), Positives = 127/137 (92%)
Query: 1 MSGSGASGNKFRMSLALPTGAVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMA 60
MSG+GA G KFR+SL LP GA+MNC DNSGARNLY++AVKG G+RLNRLPAAS GDMVMA
Sbjct: 1 MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIVVRQA+ WRR+DGV+LYFEDNAGVI NPKGEMKGSAITGPV K
Sbjct: 61 TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPR+ASNSGVVV
Sbjct: 121 ECADLWPRVASNSGVVV 137
>YBL087C Chr2 complement(59818..60189,60694..60735) [414 bp, 137 aa] Protein
component of the large (60S) ribosomal subunit,
identical to Rpl23Bp and has similarity to E. coli L14
and rat L23 ribosomal proteins
Length = 137
Score = 245 bits (625), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 117/137 (85%), Positives = 127/137 (92%)
Query: 1 MSGSGASGNKFRMSLALPTGAVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMA 60
MSG+GA G KFR+SL LP GA+MNC DNSGARNLY++AVKG G+RLNRLPAAS GDMVMA
Sbjct: 1 MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
TVKKGKPELRKKVMPAIVVRQA+ WRR+DGV+LYFEDNAGVI NPKGEMKGSAITGPV K
Sbjct: 61 TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK 120
Query: 121 ECADLWPRIASNSGVVV 137
ECADLWPR+ASNSGVVV
Sbjct: 121 ECADLWPRVASNSGVVV 137
>CD36_62220 Chr6 complement(438921..439292,439791..439796) [378 bp, 125 aa]
Similar to S. cerevisiae RPL23A/B; spliced gene
Length = 125
Score = 240 bits (613), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 117/125 (93%), Positives = 122/125 (97%)
Query: 13 MSLALPTGAVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMATVKKGKPELRKK 72
MSLALP GAVMNC DNSGARNLYVLAVKG GARLNRLPAA+AGDMVMATVKKGKPELRKK
Sbjct: 1 MSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAAAAGDMVMATVKKGKPELRKK 60
Query: 73 VMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASN 132
VMPAIV+RQ++PWRR+DGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASN
Sbjct: 61 VMPAIVIRQSKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASN 120
Query: 133 SGVVV 137
SGVVV
Sbjct: 121 SGVVV 125
>PICST_89472 Chr5 complement(1698773..1699171) [399 bp, 132 aa] predicted
protein
Length = 132
Score = 67.0 bits (162), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 21 AVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMATVKKGKP---EL-------- 69
+++N DNSGA+ + + V G L A GD + VKK +P E+
Sbjct: 6 SLLNVIDNSGAQVVECIKVLRHGP----LNFAKVGDEITVVVKKARPLQAEITGQSANNR 61
Query: 70 --RKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL-W 126
R+ + AIVVR P+RR DG + F+DNA V+VN GE G+ I+ VAKE DL +
Sbjct: 62 VKRRDICRAIVVRTKAPFRRPDGSVVRFDDNACVLVNKSGEPLGTRISSVVAKELRDLQY 121
Query: 127 PRIAS 131
+I S
Sbjct: 122 NKIVS 126
>CTRG_05235 c8 complement(11738..12136) [399 bp, 132 aa]
Length = 132
Score = 65.9 bits (159), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 64/125 (51%), Gaps = 18/125 (14%)
Query: 21 AVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMATVKKGKP---EL-------- 69
++N DNSGA+ + + V R A GD + VKK +P EL
Sbjct: 6 TMLNVIDNSGAQVVECIKV----LRHKPHSCAQIGDRITCVVKKARPPQQELAGQTSSNR 61
Query: 70 --RKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL-W 126
R+ + A+VVR P RRKDG + F+DNA V++N GE G+ I+ VAKE DL +
Sbjct: 62 VKRRDICQAVVVRTRAPLRRKDGSVVRFDDNACVLINKNGEPLGTRISSVVAKELKDLNY 121
Query: 127 PRIAS 131
+I S
Sbjct: 122 NKIVS 126
>CORT0E04890 c5 (1100060..1100470) [411 bp, 136 aa] S. cerevisiae homolog MRPL38
is structural constituent of mitochondrial large
ribosomal subunit
Length = 136
Score = 65.1 bits (157), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 22/129 (17%)
Query: 21 AVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMATVKKGKPE------------ 68
++N DNSGA+ + + V R N A GD + VK+ +P
Sbjct: 6 TLLNVIDNSGAQVVECIKV----LRHNPKSCAHIGDQITCVVKQARPTNVDSSSASSAAQ 61
Query: 69 -----LRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECA 123
R+ + A+VVRQ P+RR DG + F+DNA V++N GE G+ I+ VAKE
Sbjct: 62 ASNRVKRRDICRAVVVRQRAPFRRPDGSVVRFDDNACVLINKNGEPLGTRISSVVAKELR 121
Query: 124 DL-WPRIAS 131
DL + +I S
Sbjct: 122 DLNYNKIVS 130
>SPAPADRAFT_60997 c4 (16426..16815) [390 bp, 129 aa]
Length = 129
Score = 64.7 bits (156), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 46/122 (37%), Positives = 63/122 (51%), Gaps = 15/122 (12%)
Query: 21 AVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMATVKKGKPEL----------R 70
+++N DNSGA L V +K R A GD + VK+ KP R
Sbjct: 6 SLLNVIDNSGA--LVVECIKVL--RHKPKSCAQIGDQITVVVKEAKPIADGTTSTNKVKR 61
Query: 71 KKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL-WPRI 129
K + A+VVR P+RR DG + F+DNA V++N GE G+ I+ VAKE DL + +I
Sbjct: 62 KDICRAVVVRTRSPFRRPDGSMVKFDDNACVLINKNGEPLGTRISSVVAKELRDLQYNKI 121
Query: 130 AS 131
S
Sbjct: 122 VS 123
>CPAR2_302710 Chr3 (660989..661402) [414 bp, 137 aa] S. cerevisiae homolog MRPL38
has structural constituent of ribosome and localizes to
mitochondrial large ribosomal subunit
Length = 137
Score = 64.7 bits (156), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 23/130 (17%)
Query: 21 AVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMATVKKGKPE------------ 68
++N DNSGA+ + + V R N A GD + VK+ +P
Sbjct: 6 TLLNVIDNSGAQVVECIKV----LRHNPKSCAHIGDQITCVVKQARPTNVDASSSGSSSA 61
Query: 69 ------LRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKEC 122
R+ + A+VVRQ P+RR DG + F+DNA V++N GE G+ I+ VAKE
Sbjct: 62 QASNRVKRRDICRAVVVRQRAPFRRPDGSVVRFDDNACVLINKNGEPLGTRISSVVAKEL 121
Query: 123 ADL-WPRIAS 131
DL + +I S
Sbjct: 122 RDLNYNKIVS 131
>LELG_03861 c5 (513468..513875) [408 bp, 135 aa]
Length = 135
Score = 63.9 bits (154), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 20/117 (17%)
Query: 21 AVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMATVKKGKPE------------ 68
++N DNSGA+ + + V G + A + GD++ VKK +PE
Sbjct: 6 TLLNVIDNSGAQIVECIKVSRHGPKT----AGNIGDIITCVVKKARPEPLGPGGKVSTQL 61
Query: 69 ----LRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKE 121
R+ V A++VRQ P RR DG + F+DNA V++N E G+ I VAKE
Sbjct: 62 ANKVKRRDVCKAVIVRQKSPLRRPDGSVIRFDDNACVLINKNKEPIGTRINSVVAKE 118
>CAWG_04408 c6 complement(6665..7063) [399 bp, 132 aa]
Length = 132
Score = 63.5 bits (153), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 17/118 (14%)
Query: 21 AVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMATVKKGKP---EL-------- 69
+++N DNSGA+ + + V + A GD + VK+ +P EL
Sbjct: 6 SLLNVIDNSGAQVVECIKVLRHKPK----SCAQIGDRITCVVKQARPLQQELTGQSSTNR 61
Query: 70 --RKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL 125
R+ + A+VVR P +RKDG + F+DNA V++N GE G+ I+ VAKE DL
Sbjct: 62 VKRRDICQAVVVRTRAPLKRKDGSVVRFDDNACVLINKNGEPLGTRISSVVAKELKDL 119
>orf19.5684 Chr5 complement(15077..15475) [399 bp, 132 aa] Predicted ORF in
Assemblies 19, 20 and 21
Length = 132
Score = 63.5 bits (153), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 17/118 (14%)
Query: 21 AVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMATVKKGKP---EL-------- 69
+++N DNSGA+ + + V + A GD + VK+ +P EL
Sbjct: 6 SLLNVIDNSGAQVVECIKVLRHKPK----SCAQIGDRITCVVKQARPLQQELTGQSSTNR 61
Query: 70 --RKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL 125
R+ + A+VVR P +RKDG + F+DNA V++N GE G+ I+ VAKE DL
Sbjct: 62 VKRRDICQAVVVRTRAPLKRKDGSVVRFDDNACVLINKNGEPLGTRISSVVAKELKDL 119
>CD36_50160 Chr5 complement(30040..30438) [399 bp, 132 aa] Similar to S.
cerevisiae MRPL38; In S. cerevisiae: appears as two
protein spots (YmL34 and YmL38) on two-dimensional SDS
gels
Length = 132
Score = 63.5 bits (153), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 17/118 (14%)
Query: 21 AVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMATVKKGKP---EL-------- 69
+++N DNSGA+ + + V + A GD + VK+ +P EL
Sbjct: 6 SLLNVIDNSGAQVVECIKVLRHKPK----SCAQIGDRITCVVKQARPLQQELTGQTSTNR 61
Query: 70 --RKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL 125
R+ + A+VVR P +RKDG + F+DNA V++N GE G+ I+ VAKE DL
Sbjct: 62 VKRRDICQAVVVRTRAPLKRKDGSVVRFDDNACVLINKNGEPLGTRISSVVAKELKDL 119
>CANTEDRAFT_103580 c9 complement(295023..295421) [399 bp, 132 aa]
Length = 132
Score = 58.9 bits (141), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 17/114 (14%)
Query: 21 AVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMATVKKGKP---EL-------- 69
+++N DNSGA+ + + V G R A GD + VK+ +P E+
Sbjct: 6 SLLNVIDNSGAQVVECIKVLRHGPR----NFAKVGDEITVVVKQARPLTAEITGLSANNR 61
Query: 70 --RKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKE 121
R+ + A+VVR P+RR DG + F+DNA V+VN G+ G+ ++ VA+E
Sbjct: 62 VKRRDICRAVVVRTKAPFRRPDGSTIRFDDNACVLVNKNGDPLGTRVSSVVAQE 115
>CLUG_05805 c8 complement(463602..464000) [399 bp, 132 aa]
Length = 132
Score = 58.2 bits (139), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 21 AVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMATVKKGKP---EL-------- 69
++N DNSGA+ + V G R A GD + +K+ +P E+
Sbjct: 6 TLLNVIDNSGAQVAECIKVLRHGPR----NFAKVGDEITVVIKQARPMNTEITGQSANNR 61
Query: 70 --RKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL 125
R+ + AIVVR P+RR DG + F+DNA V++N G+ G+ ++ VAKE L
Sbjct: 62 VKRRDICRAIVVRTKAPFRRPDGSVVRFDDNACVLINKNGDPLGTRVSSVVAKELKAL 119
>DEHA2B10296g Chr2 complement(812131..812529) [399 bp, 132 aa] highly similar to
uniprot|P35996 Saccharomyces cerevisiae YKL170W MRPL38
Mitochondrial ribosomal protein of the large subunit
Length = 132
Score = 54.3 bits (129), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 18/125 (14%)
Query: 21 AVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMATVKKGKP---EL-------- 69
++N DNSGA+ + V G R A GD + VK+ + E+
Sbjct: 6 TLLNVIDNSGAQVAECIKVLRHGPR----NFAKVGDEITVVVKQARSMNKEITGQSANNR 61
Query: 70 --RKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL-W 126
R+ + AIVVR P+ R DG + F+DNA V++N G+ G+ ++ VAKE +L +
Sbjct: 62 VKRRDICRAIVVRTKSPFIRPDGSTVRFDDNACVLINKNGDPLGTRVSSVVAKELRELQY 121
Query: 127 PRIAS 131
+I S
Sbjct: 122 NKIVS 126
>PGUG_01682 c2 (884488..884886) [399 bp, 132 aa]
Length = 132
Score = 52.4 bits (124), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 18/125 (14%)
Query: 21 AVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMATVKKGKP---EL-------- 69
++ DNSGA+ + V G A GD + VK+ + E+
Sbjct: 6 TLLKVIDNSGAQVAECIKVLRHGPH----NFAKVGDEITVVVKEARSLQSEITGQSANNR 61
Query: 70 --RKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL-W 126
R+ + A+VVR P+RR DG + F+DNA V++N G+ G+ ++ VAKE D+ +
Sbjct: 62 VKRRDICRAVVVRTKAPFRRPDGSTVRFDDNACVLINKNGDPLGTRVSSVVAKELRDMKY 121
Query: 127 PRIAS 131
+I S
Sbjct: 122 NKIVS 126
>YKL170W Chr11 (130639..131055) [417 bp, 138 aa] Mitochondrial ribosomal
protein of the large subunit; appears as two protein
spots (YmL34 and YmL38) on two-dimensional SDS gels
Length = 138
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 21 AVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMATVKKGKPELRK--------- 71
+V+ DNSGA+ + V G+ + PA GD ++ ++K KP +
Sbjct: 6 SVIKVIDNSGAQLAECIKVIRKGSP--KSPAM-VGDRIVCVIQKAKPLTQNITGTANTNR 62
Query: 72 ----KVMPAIVVR-QARPWRRKDGVYLYFEDNAGVIVNPK-GEMKGSAI 114
+ AIVVR + R RKDG + F D A V++N GE G+ I
Sbjct: 63 VKKGDICHAIVVRSKQRNMCRKDGSTVAFGDTACVLINKNTGEPLGTRI 111
>DEHA2D02926g Chr4 complement(249655..250923) [1269 bp, 422 aa] some similarities
with uniprot|P38590 Saccharomyces cerevisiae YNL053W
MSG5 Dual-specificity protein phosphatase
Length = 422
Score = 27.7 bits (60), Expect = 7.5, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 91 VYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASNSG 134
+YLY + N G NPK ++ + VAKEC DL + +G
Sbjct: 259 IYLYSDPNHG---NPKIDINEFDLVINVAKECKDLSSEFDNKNG 299
Database: Seq/AA.fsa
Posted date: Feb 8, 2013 12:45 PM
Number of letters in database: 40,655,052
Number of sequences in database: 85,676
Lambda K H
0.318 0.134 0.402
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 85676 Number of Hits to DB: 9,712,633 Number of extensions: 355470 Number of successful extensions: 613 Number of sequences better than 10.0: 30 Number of HSP's gapped: 612 Number of HSP's successfully gapped: 30 Length of query: 137 Length of database: 40,655,052 Length adjustment: 96 Effective length of query: 41 Effective length of database: 32,430,156 Effective search space: 1329636396 Effective search space used: 1329636396 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (27.3 bits)